Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ccanephora_GSCOC_T00000759001 [ GSCOC_T00000759001] |
scaffold_8193 | 281 | 1231 | v1 | Coffea canephora (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ccanephora_CDP21951 CDP21951 |
Low | No | 951 | OG0142854 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -25.678 AMFE: -0.684 GC content %: 37.539 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ccanephora_CDP21951 | SwissProt | 2021-04-01 | Q9SRM3 | 2.05e-13 |
Ccanephora_CDP21951 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 |