Ccanephora GSCOC T00000901001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccanephora_GSCOC_T00000901001
[ GSCOC_T00000901001]
scaffold_1032 12320 12882 v1 Coffea canephora (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccanephora_CDP20246
CDP20246
High No 357 OG0142709
Coding potential...
Type: noncoding Potential: -0.642
Folding energies...
MFEI: -29.916 AMFE: -0.617
GC content
%: 48.459


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccanephora_GSCOC_T00000901001.png