Ccanephora GSCOC T00001680001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccanephora_GSCOC_T00001680001
[ GSCOC_T00001680001]
scaffold_176 183325 183675 v1 Coffea canephora (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccanephora_CDP17713
CDP17713
High No 351 OG0142524
Coding potential...
Type: noncoding Potential: -0.458
Folding energies...
MFEI: -28.462 AMFE: -0.584
GC content
%: 48.718


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccanephora_GSCOC_T00001680001.png