Ccanephora GSCOC T00019251001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccanephora_GSCOC_T00019251001
[ GSCOC_T00019251001]
1 3196635 3197561 v1 Coffea canephora (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccanephora_CDP16763
CDP16763
High No 809 OG0142433
Coding potential...
Type: noncoding Potential: -0.788
Folding energies...
MFEI: -24.141 AMFE: -0.616
GC content
%: 39.184


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccanephora_GSCOC_T00019251001.png