Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ccanephora_GSCOC_T00030338001 [ GSCOC_T00030338001] |
8 | 28639076 | 28639808 | v1 | Coffea canephora (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ccanephora_CDP09860 CDP09860 |
Low | No | 641 | OG0141968 | Get ORF Coding potential... Type: noncoding Potential: -0.463 Folding energies... MFEI: -20.733 AMFE: -0.563 GC content %: 36.817 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ccanephora_CDP09860 | SwissProt | 2021-04-01 | Q9LZX5 | 1.65e-8 |
Ccanephora_CDP09860 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |