Ccardunculus Ccrd 000149

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccardunculus_Ccrd_000149
[ Ccrd_000149]
scaffold_25 132421 133003 v1 Cynara cardunculus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccardunculus_KVH97748
KVH97748
High No 583 OG0153627
Coding potential...
Type: noncoding Potential: -1.037
Folding energies...
MFEI: -21.852 AMFE: -0.582
GC content
%: 37.564


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccardunculus_Ccrd_000149.png