Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ccardunculus_Ccrd_024261 [ Ccrd_024261] |
scaffold_1233 | 21266 | 83839 | v1 | Cynara cardunculus (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ccardunculus_KVH88282 KVH88282 |
Low | Yes | 261 | OG0153071 | Get ORF Coding potential... Type: noncoding Potential: -0.520 Folding energies... MFEI: -24.521 AMFE: -0.512 GC content %: 47.893 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ccardunculus_KVH88282 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Ccardunculus_KVH88282 | Rfam | 14.6 | MIR167_1 | 0.0048 |