Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ccardunculus_Ccrd_026731 [ Ccrd_026731] |
scaffold_8822 | 3072 | 3868 | v1 | Cynara cardunculus (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ccardunculus_KVF62019 KVF62019 |
Low | No | 715 | OG0152876 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -22.895 AMFE: -0.613 GC content %: 37.343 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ccardunculus_KVF62019 | SwissProt | 2021-04-01 | C0LGE0 | 5.32e-7 |
Ccardunculus_KVF62019 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |