Ccrispus CHC T00000118001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccrispus_CHC_T00000118001
[ CHC_T00000118001]
HG002003 34537 34824 v2 Chondrus crispus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccrispus_CDF39139
CDF39139
High No 288 OG0134559
Coding potential...
Type: noncoding Potential: -0.988
Folding energies...
MFEI: -29.653 AMFE: -0.566
GC content
%: 52.431


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccrispus_CHC_T00000118001.png