Ccrispus CHC T00001328001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccrispus_CHC_T00001328001
[ CHC_T00001328001]
HG001459 77449 77769 v2 Chondrus crispus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccrispus_CDF32080
CDF32080
High No 321 OG0133648
Coding potential...
Type: noncoding Potential: -0.915
Folding energies...
MFEI: -26.729 AMFE: -0.487
GC content
%: 54.829


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccrispus_CHC_T00001328001.png