Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ccrispus_CHC_T00001508001 [ CHC_T00001508001] |
HG001512 | 256605 | 256826 | v2 | Chondrus crispus (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ccrispus_CDF32546 CDF32546 |
Low | Yes | 222 | OG0133702 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -26.081 AMFE: -0.597 GC content %: 43.694 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ccrispus_CDF32546 | Rfam | 14.6 | mir-548 | 0.0016 |