Ccrispus CHC T00006351001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccrispus_CHC_T00006351001
[ CHC_T00006351001]
HG001975 35877 36179 v2 Chondrus crispus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccrispus_CDF38857
CDF38857
High No 303 OG0134523
Coding potential...
Type: noncoding Potential: -1.198
Folding energies...
MFEI: -32.904 AMFE: -0.619
GC content
%: 53.135


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccrispus_CHC_T00006351001.png