Clanatus Cla97C02G037200

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Clanatus_Cla97C02G037200
[ Cla97C02G037200]
2 23914724 23915100 v1 Citrullus lanatus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Clanatus_Cla97C02G037200.1
Cla97C02G037200.1
Low No 294 OG0139168
Coding potential...
Type: noncoding Potential: -0.677
Folding energies...
MFEI: -19.830 AMFE: -0.486
GC content
%: 40.816


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Clanatus_Cla97C02G037200.1  SwissProt 2021-04-01 P49245 3.54e-7


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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