GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Crubella_Carub.0001s0298 [ Carub.0001s0298]	scaffold_1	1023789	1024851	v1.1	Capsella rubella (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Crubella_Carub.0001s0298.1 Carub.0001s0298.1	High	No	609	OG0030201		Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -21.921 AMFE: -0.556 GC content %: 39.409
Crubella_Carub.0001s0298.2 Carub.0001s0298.2	High	No	573	OG0030201		Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -22.548 AMFE: -0.569 GC content %: 39.616

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).