GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Crubella_Carub.0001s0333 [ Carub.0001s0333]	scaffold_1	1155034	1156759	v1.1	Capsella rubella (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Crubella_Carub.0001s0333.1 Carub.0001s0333.1	High	No	545	OG0128214		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -26.147 AMFE: -0.633 GC content %: 41.284
Crubella_Carub.0001s0333.2 Carub.0001s0333.2	High	No	477	OG0128215		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -25.367 AMFE: -0.617 GC content %: 41.090

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).