GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Crubella_Carub.0002s1004 [ Carub.0002s1004]	scaffold_2	6025788	6026381	v1.1	Capsella rubella (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Crubella_Carub.0002s1004.1 Carub.0002s1004.1	High	No	490	OG0030212		Get ORF Coding potential... Type: noncoding Potential: -1.351 Folding energies... MFEI: -24.531 AMFE: -0.646 GC content %: 37.959
Crubella_Carub.0002s1004.2 Carub.0002s1004.2	High	No	313	OG0030212		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -23.706 AMFE: -0.571 GC content %: 41.534

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).