Crubella Carub.0002s1573

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Crubella_Carub.0002s1573
[ Carub.0002s1573]
scaffold_2 9391631 9392163 v1.1 Capsella rubella (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Crubella_Carub.0002s1573.1
Carub.0002s1573.1
High No 533 OG0128531
Coding potential...
Type: noncoding Potential: -0.912
Folding energies...
MFEI: -17.542 AMFE: -0.333
GC content
%: 52.720


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Crubella_Carub.0002s1573.png