Crubella Carub.0003s0488

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Crubella_Carub.0003s0488
[ Carub.0003s0488]
scaffold_3 1645523 1646019 v1.1 Capsella rubella (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Crubella_Carub.0003s0488.1
Carub.0003s0488.1
High No 416 OG0128604
Coding potential...
Type: noncoding Potential: -0.082
Folding energies...
MFEI: -25.240 AMFE: -0.640
GC content
%: 39.423


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Crubella_Carub.0003s0488.png