GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Crubella_Carub.0003s1260 [ Carub.0003s1260]	scaffold_3	4355819	4356600	v1.1	Capsella rubella (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Crubella_Carub.0003s1260.1 Carub.0003s1260.1	High	No	665	OG0030222		Get ORF Coding potential... Type: noncoding Potential: -0.580 Folding energies... MFEI: -26.241 AMFE: -0.617 GC content %: 42.556
Crubella_Carub.0003s1260.2 Carub.0003s1260.2	High	No	661	OG0030222		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -26.006 AMFE: -0.612 GC content %: 42.511

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).