Csativa Csa00427s010

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Csativa_Csa00427s010
[ Csa00427s010]
unpScaffold00427 20208 22040 v1 Camelina sativa (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Csativa_Csa00427s010.1
Csa00427s010.1
High No 1141 OG0120437
Coding potential...
Type: noncoding Potential: -0.676
Folding energies...
MFEI: -25.110 AMFE: -0.632
GC content
%: 39.702


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Csativa_Csa00427s010.png