GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Csativa_Csa09g034430 [ Csa09g034430]	9	13203677	13205416	v1	Camelina sativa (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Csativa_Csa09g034430.1 Csa09g034430.1	High	No	682	OG0029916		Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -23.211 AMFE: -0.636 GC content %: 36.510
Csativa_Csa09g034430.2 Csa09g034430.2	High	No	571	OG0029916		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -22.907 AMFE: -0.623 GC content %: 36.778

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).