GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Csativa_Csa14g006510 [ Csa14g006510]	14	2112953	2114904	v1	Camelina sativa (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Csativa_Csa14g006510.1 Csa14g006510.1	High	No	395	OG0123594		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -25.696 AMFE: -0.587 GC content %: 43.797
Csativa_Csa14g006510.2 Csa14g006510.2	High	No	725	OG0123595		Get ORF Coding potential... Type: noncoding Potential: -1.390 Folding energies... MFEI: -26.152 AMFE: -0.677 GC content %: 38.621

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).