GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Csativa_Csa14g038090 [ Csa14g038090]	14	15812351	15815520	v1	Camelina sativa (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Csativa_Csa14g038090.1 Csa14g038090.1	High	No	1411	OG0000213		Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -20.808 AMFE: -0.603 GC content %: 34.515
Csativa_Csa14g038090.2 Csa14g038090.2	High	No	524	OG0000213		Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -22.042 AMFE: -0.595 GC content %: 37.023

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).