GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Csativa_Csa15g027970 [ Csa15g027970]	15	10908121	10911707	v1	Camelina sativa (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Csativa_Csa15g027970.1 Csa15g027970.1	High	No	1280	OG0030018		Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -26.719 AMFE: -0.690 GC content %: 38.750
Csativa_Csa15g027970.2 Csa15g027970.2	High	No	921	OG0030018		Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -23.290 AMFE: -0.615 GC content %: 37.894

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).