GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Csativa_Csa20g026510 [ Csa20g026510]	20	9040951	9043439	v1	Camelina sativa (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Csativa_Csa20g026510.1 Csa20g026510.1	High	No	1246	OG0003008		Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -22.740 AMFE: -0.628 GC content %: 36.196
Csativa_Csa20g026510.2 Csa20g026510.2	High	No	1633	OG0003008		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -22.198 AMFE: -0.633 GC content %: 35.089

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).