GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0162s0023 [ Dioal.0162s0023]	scaffold162	114021	115835	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0162s0023.1 Dioal.0162s0023.1	High	No	747	OG0031073		Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -25.917 AMFE: -0.647 GC content %: 40.027
Dalata_Dioal.0162s0023.2 Dioal.0162s0023.2	High	No	615	OG0031073		Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -25.366 AMFE: -0.619 GC content %: 40.976

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).