GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0167s0037 [ Dioal.0167s0037]	scaffold167	196757	199933	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0167s0037.1 Dioal.0167s0037.1	High	No	948	OG0031074		Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -22.089 AMFE: -0.620 GC content %: 35.654
Dalata_Dioal.0167s0037.2 Dioal.0167s0037.2	High	No	830	OG0031074		Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -22.120 AMFE: -0.614 GC content %: 36.024

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).