Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.0174s0005 [ Dioal.0174s0005] |
scaffold174 | 23124 | 26543 | v2 | Dioscorea alata (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.0174s0005.1 Dioal.0174s0005.1 |
High | No | 1845 | OG0010669 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -24.493 AMFE: -0.682 GC content %: 35.935 | |
Dalata_Dioal.0174s0005.2 Dioal.0174s0005.2 |
Low | No | 1839 | OG0010669 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -24.301 AMFE: -0.677 GC content %: 35.889 | |
Dalata_Dioal.0174s0005.3 Dioal.0174s0005.3 |
Low | No | 337 | OG0010669 | Get ORF Coding potential... Type: noncoding Potential: -0.481 Folding energies... MFEI: -27.656 AMFE: -0.568 GC content %: 48.665 | |
Dalata_Dioal.0174s0005.4 Dioal.0174s0005.4 |
Low | No | 331 | OG0010669 | Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -26.254 AMFE: -0.540 GC content %: 48.640 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Dalata_Dioal.0174s0005.2 | SwissProt | 2021-04-01 | Q8L981 | 3.8e-4 |
Dalata_Dioal.0174s0005.3 | SwissProt | 2021-04-01 | Q8L981 | 4.19e-4 |
Dalata_Dioal.0174s0005.4 | SwissProt | 2021-04-01 | Q8L981 | 2.13e-5 |