GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0261s0001 [ Dioal.0261s0001]	scaffold261	10	935	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0261s0001.1 Dioal.0261s0001.1	High	No	751	OG0010670		Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -23.595 AMFE: -0.626 GC content %: 37.683
Dalata_Dioal.0261s0001.2 Dioal.0261s0001.2	High	No	540	OG0010670		Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -26.741 AMFE: -0.688 GC content %: 38.889
Dalata_Dioal.0261s0001.3 Dioal.0261s0001.3	High	No	680	OG0010670		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -25.544 AMFE: -0.663 GC content %: 38.529
Dalata_Dioal.0261s0001.4 Dioal.0261s0001.4	High	No	664	OG0010670		Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -24.985 AMFE: -0.638 GC content %: 39.157

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).