GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0505s0009 [ Dioal.0505s0009]	scaffold505	37149	39175	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0505s0009.1 Dioal.0505s0009.1	High	No	1024	OG0010672		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -27.188 AMFE: -0.664 GC content %: 40.918
Dalata_Dioal.0505s0009.2 Dioal.0505s0009.2	High	No	631	OG0010672		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -27.322 AMFE: -0.616 GC content %: 44.374
Dalata_Dioal.0505s0009.3 Dioal.0505s0009.3	High	No	648	OG0010672		Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -26.327 AMFE: -0.607 GC content %: 43.364
Dalata_Dioal.0505s0009.4 Dioal.0505s0009.4	High	No	734	OG0010672		Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.390 AMFE: -0.615 GC content %: 42.916

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).