Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.0667s0018 [ Dioal.0667s0018] |
scaffold667 | 115904 | 117595 | v2 | Dioscorea alata (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.0667s0018.1 Dioal.0667s0018.1 |
Low | No | 1400 | OG0010673 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -28.921 AMFE: -0.751 GC content %: 38.500 | |
Dalata_Dioal.0667s0018.2 Dioal.0667s0018.2 |
Low | No | 1042 | OG0010673 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -27.188 AMFE: -0.708 GC content %: 38.388 | |
Dalata_Dioal.0667s0018.3 Dioal.0667s0018.3 |
Low | No | 1012 | OG0010673 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -27.540 AMFE: -0.713 GC content %: 38.636 | |
Dalata_Dioal.0667s0018.4 Dioal.0667s0018.4 |
Low | No | 1370 | OG0010673 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -29.555 AMFE: -0.764 GC content %: 38.686 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Dalata_Dioal.0667s0018.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
Dalata_Dioal.0667s0018.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
Dalata_Dioal.0667s0018.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
Dalata_Dioal.0667s0018.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac |