GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0676s0016 [ Dioal.0676s0016]	scaffold676	225917	230417	v2	Dioscorea alata (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0676s0016.2 Dioal.0676s0016.2	High	No	956	OG0031091		Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -28.138 AMFE: -0.678 GC content %: 41.527
Dalata_Dioal.0676s0016.3 Dioal.0676s0016.3	Low	No	2978	OG0031091		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -23.922 AMFE: -0.661 GC content %: 36.165

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Dalata_Dioal.0676s0016.3	RepBase (RepeatMasker)	2014-01-31	LTR/Gypsy

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).