GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.0763s0035 [ Dioal.0763s0035]	scaffold763	187525	195516	v2	Dioscorea alata (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.0763s0035.2 Dioal.0763s0035.2	High	No	477	OG0031094		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -24.906 AMFE: -0.571 GC content %: 43.606
Dalata_Dioal.0763s0035.3 Dioal.0763s0035.3	High	No	403	OG0031094		Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -24.367 AMFE: -0.549 GC content %: 44.417

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).