GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.1343s0014 [ Dioal.1343s0014]	scaffold1343	126957	129471	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.1343s0014.1 Dioal.1343s0014.1	High	No	607	OG0007320		Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -27.084 AMFE: -0.632 GC content %: 42.834
Dalata_Dioal.1343s0014.2 Dioal.1343s0014.2	High	No	801	OG0007320		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -25.755 AMFE: -0.618 GC content %: 41.698
Dalata_Dioal.1343s0014.3 Dioal.1343s0014.3	High	No	497	OG0007320		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -28.229 AMFE: -0.629 GC content %: 44.869
Dalata_Dioal.1343s0014.4 Dioal.1343s0014.4	High	No	564	OG0007320		Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -26.560 AMFE: -0.602 GC content %: 44.149
Dalata_Dioal.1343s0014.5 Dioal.1343s0014.5	High	No	332	OG0007320		Get ORF Coding potential... Type: noncoding Potential: -0.561 Folding energies... MFEI: -22.078 AMFE: -0.476 GC content %: 46.386

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).