GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.2426s0001 [ Dioal.2426s0001]	scaffold2426	13	3906	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.2426s0001.1 Dioal.2426s0001.1	High	No	1152	OG0031127		Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -25.972 AMFE: -0.668 GC content %: 38.889
Dalata_Dioal.2426s0001.2 Dioal.2426s0001.2	High	No	887	OG0031127		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -26.663 AMFE: -0.655 GC content %: 40.699

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).