GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Dalata_Dioal.2624s0017 [ Dioal.2624s0017]	scaffold2624	98449	99192	v2	Dioscorea alata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Dalata_Dioal.2624s0017.1 Dioal.2624s0017.1	High	No	644	OG0031130		Get ORF Coding potential... Type: noncoding Potential: -0.171 Folding energies... MFEI: -24.146 AMFE: -0.596 GC content %: 40.528
Dalata_Dioal.2624s0017.2 Dioal.2624s0017.2	High	No	578	OG0031130		Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -22.266 AMFE: -0.557 GC content %: 39.965

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).