Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.2934s0014 [ Dioal.2934s0014] |
scaffold2934 | 103773 | 105054 | v2 | Dioscorea alata (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Dalata_Dioal.2934s0014.1 Dioal.2934s0014.1 |
Low | Yes | 827 | OG0031137 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -31.620 AMFE: -0.863 GC content %: 36.638 | |
Dalata_Dioal.2934s0014.2 Dioal.2934s0014.2 |
Low | Yes | 641 | OG0031137 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -36.396 AMFE: -0.933 GC content %: 39.002 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Dalata_Dioal.2934s0014.1 | Rfam | 14.6 | MIR167_1 | 4.6e-4 |
Dalata_Dioal.2934s0014.2 | Rfam | 14.6 | MIR167_1 | 3.6e-4 |