GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Etef_Et_C8399801-0.1-1.path1 [ Et_C8399801-0.1-1.path1]	C8399801	744	1297	v1	Eragrostis tef (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Etef_Et_C8399801-0.1-1.mrna1 Et_C8399801-0.1-1.mrna1	High	No	384	OG0162793		Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -32.448 AMFE: -0.623 GC content %: 52.083

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).