Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Etef_Et_s1016-0.24-1.path1 [ Et_s1016-0.24-1.path1] |
scaffold1016 | 38667 | 40910 | v1 | Eragrostis tef (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Etef_Et_s1016-0.24-1.mrna1 Et_s1016-0.24-1.mrna1 |
Low | No | 1460 | OG0162822 | Get ORF Coding potential... Type: coding Potential: 0.301 Folding energies... MFEI: -33.630 AMFE: -0.634 GC content %: 53.014 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Etef_Et_s1016-0.24-1.mrna1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-hATm |