GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.1Z007400 [ Gobar.1Z007400]	scaffold_1061	19176	23072	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.1Z007400.1 Gobar.1Z007400.1	High	No	1194	OG0010758		Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -23.626 AMFE: -0.625 GC content %: 37.772
Gbarbadense_Gobar.1Z007400.2 Gobar.1Z007400.2	High	No	1092	OG0010758		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -24.038 AMFE: -0.631 GC content %: 38.095

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).