Gbarbadense Gobar.1Z071300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.1Z071300 [ Gobar.1Z071300] |
scaffold_1927 | 15249 | 17327 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.1Z071300.1 Gobar.1Z071300.1 |
High | No | 957 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.220 AMFE: -0.673 GC content %: 40.439 | |
| Gbarbadense_Gobar.1Z071300.2 Gobar.1Z071300.2 |
High | No | 824 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -28.507 AMFE: -0.685 GC content %: 41.626 | |
| Gbarbadense_Gobar.1Z071300.3 Gobar.1Z071300.3 |
High | No | 821 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.429 AMFE: -0.684 GC content %: 41.535 | |
| Gbarbadense_Gobar.1Z071300.4 Gobar.1Z071300.4 |
High | No | 954 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.149 AMFE: -0.673 GC content %: 40.356 | |
| Gbarbadense_Gobar.1Z071300.5 Gobar.1Z071300.5 |
High | No | 895 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.475 AMFE: -0.663 GC content %: 41.453 | |
| Gbarbadense_Gobar.1Z071300.6 Gobar.1Z071300.6 |
High | No | 892 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.399 AMFE: -0.662 GC content %: 41.368 | |
| Gbarbadense_Gobar.1Z071300.7 Gobar.1Z071300.7 |
High | No | 553 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -29.313 AMFE: -0.636 GC content %: 46.112 | |
| Gbarbadense_Gobar.1Z071300.8 Gobar.1Z071300.8 |
High | No | 550 | OG0000277 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -29.436 AMFE: -0.640 GC content %: 46.000 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
