GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.A01G115800 [ Gobar.A01G115800]	A01	21796232	21798006	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.A01G115800.1 Gobar.A01G115800.1	High	No	1006	OG0001352		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -26.958 AMFE: -0.671 GC content %: 40.159
Gbarbadense_Gobar.A01G115800.2 Gobar.A01G115800.2	High	No	996	OG0001352		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -26.657 AMFE: -0.665 GC content %: 40.060
Gbarbadense_Gobar.A01G115800.3 Gobar.A01G115800.3	High	No	713	OG0001352		Get ORF Coding potential... Type: noncoding Potential: -0.553 Folding energies... MFEI: -25.947 AMFE: -0.634 GC content %: 40.954
Gbarbadense_Gobar.A01G115800.4 Gobar.A01G115800.4	High	No	703	OG0001352		Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -25.875 AMFE: -0.634 GC content %: 40.825

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).