Gbarbadense Gobar.A01G119700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A01G119700 [ Gobar.A01G119700] |
A01 | 24586346 | 24589136 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A01G119700.1 Gobar.A01G119700.1 |
High | No | 834 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -24.844 AMFE: -0.654 GC content %: 38.010 | |
| Gbarbadense_Gobar.A01G119700.2 Gobar.A01G119700.2 |
High | No | 967 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -24.685 AMFE: -0.661 GC content %: 37.332 | |
| Gbarbadense_Gobar.A01G119700.3 Gobar.A01G119700.3 |
High | No | 847 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -24.947 AMFE: -0.660 GC content %: 37.780 | |
| Gbarbadense_Gobar.A01G119700.4 Gobar.A01G119700.4 |
High | No | 839 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -25.054 AMFE: -0.687 GC content %: 36.472 | |
| Gbarbadense_Gobar.A01G119700.5 Gobar.A01G119700.5 |
High | No | 733 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -25.157 AMFE: -0.683 GC content %: 36.835 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
