Gbarbadense Gobar.A02G030700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A02G030700 [ Gobar.A02G030700] |
A02 | 3129026 | 3130731 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A02G030700.1 Gobar.A02G030700.1 |
High | No | 1365 | OG0003903 | Get ORF Coding potential... Type: noncoding Potential: -0.729 Folding energies... MFEI: -23.077 AMFE: -0.599 GC content %: 38.535 | |
| Gbarbadense_Gobar.A02G030700.2 Gobar.A02G030700.2 |
High | No | 742 | OG0007418 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -21.146 AMFE: -0.511 GC content %: 41.375 | |
| Gbarbadense_Gobar.A02G030700.3 Gobar.A02G030700.3 |
High | No | 1190 | OG0003046 | Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -22.462 AMFE: -0.586 GC content %: 38.319 | |
| Gbarbadense_Gobar.A02G030700.4 Gobar.A02G030700.4 |
High | No | 1330 | OG0003903 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -22.835 AMFE: -0.592 GC content %: 38.571 | |
| Gbarbadense_Gobar.A02G030700.5 Gobar.A02G030700.5 |
High | No | 942 | OG0003046 | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -22.208 AMFE: -0.555 GC content %: 40.021 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
