Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.A02G101400 [ Gobar.A02G101400] |
A02 | 38335967 | 38340047 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.A02G101400.3 Gobar.A02G101400.3 |
Low | No | 821 | OG0007430 | Get ORF Coding potential... Type: noncoding Potential: -0.330 Folding energies... MFEI: -23.946 AMFE: -0.705 GC content %: 33.983 | |
Gbarbadense_Gobar.A02G101400.5 Gobar.A02G101400.5 |
Low | No | 738 | OG0169665 | Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -23.455 AMFE: -0.684 GC content %: 34.282 | |
Gbarbadense_Gobar.A02G101400.6 Gobar.A02G101400.6 |
Low | No | 787 | OG0018052 | Get ORF Coding potential... Type: noncoding Potential: -0.317 Folding energies... MFEI: -24.079 AMFE: -0.704 GC content %: 34.180 | |
Gbarbadense_Gobar.A02G101400.7 Gobar.A02G101400.7 |
Low | No | 763 | OG0018052 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -24.522 AMFE: -0.720 GC content %: 34.076 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.A02G101400.6 | SwissProt | 2021-04-01 | Q8RWZ7 | 1.72e-7 |
Gbarbadense_Gobar.A02G101400.7 | SwissProt | 2021-04-01 | Q8RWZ7 | 9.3e-9 |
Gbarbadense_Gobar.A02G101400.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
Gbarbadense_Gobar.A02G101400.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
Gbarbadense_Gobar.A02G101400.3 | SwissProt | 2021-04-01 | Q8L5Y6 | 7.47e-10 |
Gbarbadense_Gobar.A02G101400.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
Gbarbadense_Gobar.A02G101400.5 | SwissProt | 2021-04-01 | Q8L5Y6 | 4.7e-10 |