GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.A04G014000 [ Gobar.A04G014000]	A04	1607354	1610064	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.A04G014000.1 Gobar.A04G014000.1	High	No	1294	OG0002490		Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -24.845 AMFE: -0.622 GC content %: 39.954
Gbarbadense_Gobar.A04G014000.2 Gobar.A04G014000.2	High	No	957	OG0002490		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -24.963 AMFE: -0.611 GC content %: 40.857
Gbarbadense_Gobar.A04G014000.3 Gobar.A04G014000.3	High	No	677	OG0002490		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -23.072 AMFE: -0.605 GC content %: 38.109

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).