Gbarbadense Gobar.A05G427100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A05G427100 [ Gobar.A05G427100] |
A05 | 101255733 | 101258470 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.A05G427100.1 Gobar.A05G427100.1 |
High | No | 765 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -25.020 AMFE: -0.613 GC content %: 40.784 | |
| Gbarbadense_Gobar.A05G427100.2 Gobar.A05G427100.2 |
High | No | 1099 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -25.532 AMFE: -0.654 GC content %: 39.035 | |
| Gbarbadense_Gobar.A05G427100.3 Gobar.A05G427100.3 |
High | No | 1201 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -25.545 AMFE: -0.657 GC content %: 38.884 | |
| Gbarbadense_Gobar.A05G427100.4 Gobar.A05G427100.4 |
High | No | 1196 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -25.744 AMFE: -0.664 GC content %: 38.796 | |
| Gbarbadense_Gobar.A05G427100.5 Gobar.A05G427100.5 |
High | No | 1104 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -25.716 AMFE: -0.657 GC content %: 39.130 | |
| Gbarbadense_Gobar.A05G427100.6 Gobar.A05G427100.6 |
High | No | 1222 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -25.540 AMFE: -0.656 GC content %: 38.953 | |
| Gbarbadense_Gobar.A05G427100.7 Gobar.A05G427100.7 |
High | No | 1227 | OG0000195 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -25.672 AMFE: -0.658 GC content %: 39.038 | |
| Gbarbadense_Gobar.A05G427100.8 Gobar.A05G427100.8 |
High | No | 760 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -24.750 AMFE: -0.609 GC content %: 40.658 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
