GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.A06G068700 [ Gobar.A06G068700]	A06	12237483	12239221	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.A06G068700.1 Gobar.A06G068700.1	High	No	728	OG0007594		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -21.703 AMFE: -0.560 GC content %: 38.736
Gbarbadense_Gobar.A06G068700.2 Gobar.A06G068700.2	High	No	522	OG0010947		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -19.176 AMFE: -0.503 GC content %: 38.123

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).