Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.A09G042400 [ Gobar.A09G042400] |
A09 | 20826914 | 20829218 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.A09G042400.1 Gobar.A09G042400.1 |
Low | No | 802 | OG0003947 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -23.229 AMFE: -0.615 GC content %: 37.781 | |
Gbarbadense_Gobar.A09G042400.2 Gobar.A09G042400.2 |
Low | No | 870 | OG0003947 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -22.908 AMFE: -0.611 GC content %: 37.471 | |
Gbarbadense_Gobar.A09G042400.3 Gobar.A09G042400.3 |
High | No | 259 | OG0170047 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -18.958 AMFE: -0.522 GC content %: 36.293 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.A09G042400.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gbarbadense_Gobar.A09G042400.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |