GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.A10G267600 [ Gobar.A10G267600]	A10	109849310	109852652	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.A10G267600.1 Gobar.A10G267600.1	High	No	1456	OG0002534		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.295 AMFE: -0.676 GC content %: 37.431
Gbarbadense_Gobar.A10G267600.2 Gobar.A10G267600.2	High	No	1428	OG0002534		Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -23.340 AMFE: -0.656 GC content %: 35.574
Gbarbadense_Gobar.A10G267600.3 Gobar.A10G267600.3	High	No	1038	OG0002534		Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -23.401 AMFE: -0.595 GC content %: 39.306

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).